孙光超

孙光超

博士研究生导师

职称：特聘教授

性别：男

学历学位：博士研究生

毕业院校及时间：2017年6月毕业于美国内布拉斯加大学林肯分校（University of Nebraska Lincoln)

邮箱：guangchaosun@sicau.edu.cn； s.guangchao@hotmail.com

学习及工作经历：

简介：孙光超， 男， 博士，四川农业大学高层次引进人才（领军人才）特聘教授，博士生导师。曾任美国妙佑医疗国际生信高级科学家，助理教授，美国内布拉斯加大学林肯分校客座教授。四川省“天府峨眉计划”青年人才，成都市”蓉漂计划青年科学家“。 主要从事基因组学，作物适应性进化以及作物抗逆遗传机理方面的研究。利用数量遗传学，多组学整合与学科交叉等方法挖掘玉米及其近缘种的抗逆机制。近年来，以第一作者（含共一)或通讯作者在Nature Communications, Nature Structural Molecular Biology, Genome Biology, PLoS Genetics, 等国际期刊发表论文 10 余篇。

研究领域

(1) 玉米及其近缘种逆境响应的分子遗传机理

(2) 基因组复杂变异的鉴定及其与重要性状的关联分析

(3) 作物与病原互作的分子机理

近5年科研情况：

主持及参与科研项目：

1. 国家自然科学基金委员会,青年科学基金项目, 32401781,葡萄糖转移蛋白感知海藻糖调控SNRK1依赖 的细胞自噬的分子机理, 2025-01-01至2027-12-31, 30万元,在研,主持

2.美国国家自然基金(NSF),基础研究项目(Basic Research Grants), OIA-1826781, RII Track-2 FEC: Functional analysis of nitrogen responsive networks in Sorghum., 2018-01至 今, 2600万元,在 研,参与

3.Foundation for Food and Agriculture Research, Agriculture, 602757, Crops in silico: Increasing crop production by connecting models from the microscale to the macroscale., 2019-01 至2023-01, 3256万元,结题,参与

4.美国国家自然基金(NSF) ,基础研究项目(Basic Research Grants), OIA-1557417,“Center for Root and Rhizobiome Innovation.”, 2016-01至2021-05, 13824万元,结题,参与

5.USDA National Institute of Food and Agriculture, USDA-NIFA, 2016-67013-24613, Identifying mechanisms conferring low temperature tolerance in maize, sorghum, and frost tolerant relatives., 2015-01 至2020-01, 296万元,结题,参与

发表论文或出版专著：

1.Guangchao Sun;Nishikant Wase; Shengqiang Shu; Jerry Jenkins; Bangjun Zhou; J. Vladimir Torres-Rodríguez; Cindy Chen; Laura Sandor; Chris Plott; Yuko Yoshinga; Christopher Daum; Peng Qi; Kerrie Barry; Anna Lipzen; Luke Berry; Connor Pedersen; Thomas Gottilla; Ashley Foltz; Huihui Yu; Ronan O’Malley; Chi Zhang; Katrien M. Devos; Brandi Sigmon; Bin Yu; Toshihiro Obata; Jeremy Schmutz; James C. Schnable ; Genome of Paspalum vaginatum and the role of trehalose mediated autophagy in increasing maize biomass, Nature Communications, 2022, 13(1): 7731 (第一作者)

2.Guangchao Sun;Huihui Yu; Peng Wang; Martha Lopez Guerrero; Ravi V. Mural; Olivier N. Mizero; Marcin Grzybowski; Baoxing Song; Karin van Dijk; Daniel P. Schachtman; Chi Zhang; James C. Schnable ; A role for heritable transcriptomic variation in maize adaptation to temperate environments, Genome Biology, 2023, 24(55) (第一作者)

3.Guangchao Sun;Ravi V. Mural; Jonathan D. Turkus; James C. Schnable ; Quantitative Resistance Loci to Southern Rust Mapped in a Temperate Maize Diversity Panel, Phytopathology®, 2022, 112(3): 579-587 (第一作者兼共同通讯作者)

4.Guangchao Sun;Xiaobo Qi; Richard Wilson ; A Feed-Forward Subnetwork Emerging from Integrated TOR- and cAMP/PKA-Signaling Architecture Reinforces Magnaporthe oryzae Appressorium Morphogenesis, Molecular Plant-microbe Interactions, 2019, 32(5): 593-607 (第一作者)

5.Jesse R Walsh;Guangchao Sun;Jagadheshwar Balan; Jayson Hardcastle; Jason Vollenweider; Calvin Jerde; Kandelaria Rumilla; Christy Koellner; Alaa Koleilat; Linda Hasadsri; Benjamin Kipp; Garrett Jenkinson; Eric Klee ; A supervised learning method for classifying methylation disorders, BMC bioinformatics, 2024, 25(1): 66 (共同第一作者)

6.Guangchao Sun;Christian Elowsky; Gang Li; Richard Wilson ; TOR-autophagy branch signaling via Imp1 dictates plant-microbe biotrophic interface longevity, PLoS Genetics, 2018, 14(11): e1007814 (第一作者)

7.Margarita Marroquin-Guzman;Guangchao Sun;Richard A.Wilson ; Glucose-ABL1-TOR Signaling Modulates Cell Cycle Tuning to Control Terminal Appressorial Cell Differentiation, PLoS Genetics, 2017, 13(1) (共同第一作者)

8.Guangchao Sun;Shichang Xie; Lin Tang; Chao Zhao; Mian Zhang; Lili Huang ; Comparative genomics of five Valsa species gives insights on their pathogenicity evolution, G3 Genes|Genomes|Genetics, 2022, 13(2) (第一作者)

9.Guangchao Sun; Saranya Sankaranarayanan; Jagadheshwar Balan; Rohan David Gnanaolivu; Neiladri Saha; Ramanath Majumdar; Noemi Vidal Folch; Amber Bridgeman; Stephen Murphy; Benjamin Kipp; Devin Oglesbee; Eric Klee ; An Anchor-Based Read-Origin Inference Method Enhanced SMN1/2 Copy Number Variation and Conversion Event Detection in Spinal Muscular Atrophy Patients Using Oxford Nanopore Technology Long Reads, Journal of Molecular Diagnostics,2023, 25(11):77 (第一作者)

10.Kloeber, Jake A., Bin Chen, Guangchao Sun, Charles S. King, Zhiquan Wang, Li Wang, Zheming Wu et al. "KCTD10 is a sensor for co-directional transcription–replication conflicts." Nature (2025): 1-10.

11.Huihui Yu; Mu Li;  Jaspreet Sandhu; Guangchao Sun; James C. Schnable; Harkamal Walia; Weibo Xie; Bin Yu; Jeffrey P. Mower; Chi Zhang ; Pervasive misannotation of microexons that are evolutionarily conserved and crucial for gene function in plants, Nature Communications, 2022, 13(1)

12.Gang Li; Xiaobo Qi; Guangchao Sun; Raquel O. Rocha; Lauren M. Segal; Katherine S. Downey; Janet D. Wright; Sergey Shabala ; Terminating rice innate immunity induction requires a network of antagonistic and redox‐responsive E3 ubiquitin ligases targeting a fungal sirtuin, New Phytologist, 2020, 226(2): 523-540

13.Ravi V. Mural; Guangchao Sun; Marcin Grzybowski; Michael C Tross; Hongyu Jin; Christine Smith; Linsey Newton; Carson M. Andorf; Margaret R. Woodhouse; Addie Thompson; Brandi Sigmon; James C. Schnable ; Association mapping across a multitude of traits collected in diverse environments in maize, GigaScience, 2022, 11

14.Rituraj Khound; Guangchao Sun;Ravi V. Mural; James C. Schnable; Dipak K. Santra ; SNP discovery in proso millet (Panicum miliaceum L.) using low-pass genome sequencing, Plant Direct, 2022, 6(9)

15.Michael C. Tross; Marcin W. Grzybowski; Talukder Z. Jubery; Ryleigh J. Grove; Aime V. Nishimwe; J. Vladimir Torres‐Rodriguez; Guangchao Sun;Baskar Ganapathysubramanian; Yufeng Ge; James C. Schnable ; Data driven discovery and quantification of hyperspectral leaf reflectance phenotypes across a maize diversity panel, The Plant Phenome Journal, 2024, 7(1)

16.J. Vladimir Torres‐Rodríguez; Delin Li; Jonathan Turkus; Linsey Newton; Jensina Davis; Lina Lopez‐Corona; Waqar Ali; Guangchao Sun;Ravi V. Mural; Marcin W. Grzybowski; Bradley M. Zamft; Addie M. Thompson; James C. Schnable ; Population‐level gene expression can repeatedly link genes to functions in maize, The Plant Journal, 2024, 119(2): 844-860

17.Engelhorn, Julia, Samantha J. Snodgrass, Amelie Kok, Arun S. Seetharam, Michael Schneider, Tatjana Kiwit, Ayush Singh et al. "Genetic variation at transcription factor binding sites largely explains phenotypic heritability in maize." Nature Genetics (2025): 1-10.

曾获荣誉：

1.2020年8月, PSI-CROPS系列讲座最佳报告奖

2.2019年4月, PSI-CROPS参会基金

3.2016年8月, Milton E. Mohr优秀助教奖学金

4.2016年10月,内布拉斯加大学林肯分校植物科学大会最佳墙报奖

5.2016年7月, David H. & Anne E. Larrick Memorial参会基金

6.2015年9月, Widaman Trust优秀助研奖学金